Step 1: This script performs QC and normalization. The input is CSV from Qupath, and the output is anndata, which is normalised and QCed. Script_1_QC_Normalization.py --input experssion_fromQupath.csv ...
Processing single-cell RNA-seq data from GEO databases typically involves tedious manual steps: downloading raw files, matching metadata, handling different file formats, and running standard ...
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