Suffix arrays serve as a fundamental tool in string processing by indexing all suffixes of a text in lexicographical order, thereby facilitating fast pattern searches, text retrieval, and genome ...

Abstract: The suffix array is an indexing data structure used in a wide range of applications in Bioinformatics. Biological DNA sequences are available to download from public servers in the form of ...

This pipeline performs substring-level exact deduplication on text datasets. Instead of removing entire duplicate documents, it identifies and removes repeated substrings (e.g., boilerplate headers, ...

Abstract: String match has been widely used in such diverse areas as data compression, search engine, information retrieval. Due to its simplicity and high-efficient space, suffix array is used to ...

libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.

When William Legrand finally decrypted the string, it did not seem to make much more sense than it did before. The suffix tree is the core data structure in string analysis. It has a rich history, ...

String indexes such as the suffix array (SA) and the closely related longest common prefix (LCP) array are fundamental objects in bioinformatics and have a wide variety of applications. Despite their ...